Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs34657910 chr16:24822320 CAG/C 3.58E-6 118 46.43 29.23 31.37 KM Plot
THYM rs34660045 chr15:71816660 C/T 1.51E-6 116 39.75 47.63 12.52 KM Plot
THYM rs34708237 chr21:45583937 G/A 0.000116 118 38.58 51.23 28.43 KM Plot
THYM rs34709632 chr6:163048380 A/G 0.000306 117 45.87 27.33 25.4 KM Plot
THYM rs34772809 chr1:210577831 C/T 0.000106 116 46.43 35 26.2 KM Plot
THYM rs34815971 chr11:118301066 A/G 5.26E-5 118 41.22 54.08 15.72 KM Plot
THYM rs34838515 chr8:50120172 C/G 2.31E-10 119 46.27 50.1 25.83 KM Plot
THYM rs34872575 chr3:52986277 G/A 0.000184 118 42.9 23.8 25.63 KM Plot
THYM rs34876741 chr11:125578320 TG/T 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs34905640 chr2:30730513 C/CT 4.49E-7 118 38.58 45.87 13.23 KM Plot
THYM rs34909767 chr21:44081203 G/A 0.000109 117 41.22 40.23 28.43 KM Plot
THYM rs34926278 chr8:50117555 G/C 3.37E-10 118 46.27 49.75 25.83 KM Plot
THYM rs34933390 chr3:53006265 T/G 0.000283 117 42.9 23.75 25.63 KM Plot
THYM rs34943350 chr3:53012888 C/T 0.000219 117 42.82 23.8 25.63 KM Plot
THYM rs34953488 chr2:30717955 CT/C 3.13E-7 119 38.83 45.87 13.23 KM Plot